After posting this on the Aspose PDF forums, I was told to post it here. so here is the problem and their information regard what they found.
Problem: We have converted some of the PDFs using the Aspose.Words and PDF and it seems that the PDF is missing some of the text that is in the Word document. When using an other PDF writer it comes out the same as the Word Document.
What they found: I have tested the code and was able to reproduce the error. This is caused by incorrect values for First Line Indent and Left Indent in the xml generated by Aspose.Words. Please post this problem on the Aspose.Words forum so that they can look into it. In order to avoid this for now please set the Indents as I have done in the attached file.
I will attach the start file for you.
I can send the out put from Aspose Word/PDF and the output from another PDF Writer so that you can see the difference. Just give me your email and I will send it since I can only attach one file here.
Basically you will notice that in the Aspose output the Market Area on the top right is missing.